viennarna

Download        : docker pull ghcr.io/autamus/viennarna
Compressed Size : 177MB

Description

The ViennaRNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.

Usage

Pull (Download)

To download the latest version of viennarna run,

docker pull ghcr.io/autamus/viennarna:latest

or to download a specific version of viennarna run,

docker pull ghcr.io/autamus/viennarna:2.4.3

Run

To run the container as an application run,

docker run --rm ghcr.io/autamus/viennarna viennarna --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/viennarna bash

Mounting volumes between the container and your machine

To access files from your machine within the viennarna container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/viennarna viennarna /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.

HPC

If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC viennarna container here.