r-seqlogo
Download : docker pull ghcr.io/autamus/r-seqlogo
Compressed Size : 277MB
Description
Sequence logos for DNA sequence alignments seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).
Usage
Pull (Download)
To download the latest version of r-seqlogo run,
docker pull ghcr.io/autamus/r-seqlogo:latest
or to download a specific version of r-seqlogo run,
docker pull ghcr.io/autamus/r-seqlogo:1.56.0
Run
To run the container as an application run,
docker run --rm ghcr.io/autamus/r-seqlogo r-seqlogo --version
or to run the container in an interactive session run,
docker run -it --rm ghcr.io/autamus/r-seqlogo bash
Mounting volumes between the container and your machine
To access files from your machine within the r-seqlogo container you’ll have to mount them using the -v external/path:internal/path
option.
For example,
docker run -v ~/Documents/Data:/Data ghcr.io/autamus/r-seqlogo r-seqlogo /Data/myData.csv
which will mount the ~/Documents/Data
directory on your computer to the /Data
directory within the container.
HPC
If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC r-seqlogo container here.