prodigal
Download : docker pull ghcr.io/autamus/prodigal
Compressed Size : 27MB
Description
Fast, reliable protein-coding gene prediction for prokaryotic genomes.
Usage
Pull (Download)
To download the latest version of prodigal run,
docker pull ghcr.io/autamus/prodigal:latest
or to download a specific version of prodigal run,
docker pull ghcr.io/autamus/prodigal:2.6.3
Run
To run the container as an application run,
docker run --rm ghcr.io/autamus/prodigal prodigal --version
or to run the container in an interactive session run,
docker run -it --rm ghcr.io/autamus/prodigal bash
Mounting volumes between the container and your machine
To access files from your machine within the prodigal container you’ll have to mount them using the -v external/path:internal/path
option.
For example,
docker run -v ~/Documents/Data:/Data ghcr.io/autamus/prodigal prodigal /Data/myData.csv
which will mount the ~/Documents/Data
directory on your computer to the /Data
directory within the container.
HPC
If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC prodigal container here.