parallel-netcdf

Download        : docker pull ghcr.io/autamus/parallel-netcdf
Compressed Size : 65MB

Description

PnetCDF (Parallel netCDF) is a high-performance parallel I/O library for accessing files in format compatibility with Unidata’s NetCDF, specifically the formats of CDF-1, 2, and 5.

Usage

Pull (Download)

To download the latest version of parallel-netcdf run,

docker pull ghcr.io/autamus/parallel-netcdf:latest

or to download a specific version of parallel-netcdf run,

docker pull ghcr.io/autamus/parallel-netcdf:1.12.2

Run

To run the container as an application run,

docker run --rm ghcr.io/autamus/parallel-netcdf parallel-netcdf --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/parallel-netcdf bash

Mounting volumes between the container and your machine

To access files from your machine within the parallel-netcdf container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/parallel-netcdf parallel-netcdf /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.

HPC

If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC parallel-netcdf container here.