muscle
Download : docker pull ghcr.io/autamus/muscle
Compressed Size : 27MB
Description
MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW.
Usage
Pull (Download)
To download the latest version of muscle run,
docker pull ghcr.io/autamus/muscle:latest
or to download a specific version of muscle run,
docker pull ghcr.io/autamus/muscle:3.8.1551
Run
To run the container as an application run,
docker run --rm ghcr.io/autamus/muscle muscle --version
or to run the container in an interactive session run,
docker run -it --rm ghcr.io/autamus/muscle bash
Mounting volumes between the container and your machine
To access files from your machine within the muscle container you’ll have to mount them using the -v external/path:internal/path
option.
For example,
docker run -v ~/Documents/Data:/Data ghcr.io/autamus/muscle muscle /Data/myData.csv
which will mount the ~/Documents/Data
directory on your computer to the /Data
directory within the container.
HPC
If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC muscle container here.