iq-tree
Download : docker pull ghcr.io/autamus/iq-tree
Compressed Size : 49MB
Description
IQ-TREE Efficient software for phylogenomic inference
Usage
Pull (Download)
To download the latest version of iq-tree run,
docker pull ghcr.io/autamus/iq-tree:latest
or to download a specific version of iq-tree run,
docker pull ghcr.io/autamus/iq-tree:2.0.6
Run
To run the container as an application run,
docker run --rm ghcr.io/autamus/iq-tree iq-tree --version
or to run the container in an interactive session run,
docker run -it --rm ghcr.io/autamus/iq-tree bash
Mounting volumes between the container and your machine
To access files from your machine within the iq-tree container you’ll have to mount them using the -v external/path:internal/path
option.
For example,
docker run -v ~/Documents/Data:/Data ghcr.io/autamus/iq-tree iq-tree /Data/myData.csv
which will mount the ~/Documents/Data
directory on your computer to the /Data
directory within the container.
HPC
If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC iq-tree container here.