Versions: [1.12.0, 1.13]


Download        : docker pull ghcr.io/autamus/hdf5
Compressed Size : 95MB


.format(version=str(spec.version.up_to(3))) with open(“check.c”, ‘w


Pull (Download)

To download the latest version of hdf5 run,

docker pull ghcr.io/autamus/hdf5:latest

or to download a specific version of hdf5 run,

docker pull ghcr.io/autamus/hdf5:1.12.0


To run the container as an application run,

docker run --rm ghcr.io/autamus/hdf5 hdf5 --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/hdf5 bash

Mounting volumes between the container and your machine

To access files from your machine within the hdf5 container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/hdf5 hdf5 /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.


If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC hdf5 container here.