diamond

Download        : docker pull ghcr.io/autamus/diamond
Compressed Size : 29MB

Description

DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data.

Usage

Pull (Download)

To download the latest version of diamond run,

docker pull ghcr.io/autamus/diamond:latest

or to download a specific version of diamond run,

docker pull ghcr.io/autamus/diamond:2.0.10

Run

To run the container as an application run,

docker run --rm ghcr.io/autamus/diamond diamond --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/diamond bash

Mounting volumes between the container and your machine

To access files from your machine within the diamond container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/diamond diamond /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.

HPC

If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC diamond container here.