Versions: [2.0.10, 2.0.11, 2.0.12, 2.0.13, 2.0.4, 2.0.8, 2.0.9]


Download        : docker pull ghcr.io/autamus/diamond
Compressed Size : 29MB


DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data.


Pull (Download)

To download the latest version of diamond run,

docker pull ghcr.io/autamus/diamond:latest

or to download a specific version of diamond run,

docker pull ghcr.io/autamus/diamond:2.0.10


To run the container as an application run,

docker run --rm ghcr.io/autamus/diamond diamond --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/diamond bash

Mounting volumes between the container and your machine

To access files from your machine within the diamond container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/diamond diamond /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.


If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC diamond container here.