astral

Download        : docker pull ghcr.io/autamus/astral
Compressed Size : 220MB

Description

ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

Usage

Pull (Download)

To download the latest version of astral run,

docker pull ghcr.io/autamus/astral:latest

or to download a specific version of astral run,

docker pull ghcr.io/autamus/astral:5.6.1

Run

To run the container as an application run,

docker run --rm ghcr.io/autamus/astral astral --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/astral bash

Mounting volumes between the container and your machine

To access files from your machine within the astral container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/astral astral /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.

HPC

If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC astral container here.