ants

Download        : docker pull ghcr.io/autamus/ants
Compressed Size : 563MB

Description

ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

Usage

Pull (Download)

To download the latest version of ants run,

docker pull ghcr.io/autamus/ants:latest

or to download a specific version of ants run,

docker pull ghcr.io/autamus/ants:2.3.5

Run

To run the container as an application run,

docker run --rm ghcr.io/autamus/ants ants --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/ants bash

Mounting volumes between the container and your machine

To access files from your machine within the ants container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/ants ants /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.

HPC

If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC ants container here.