admixtools

Download        : docker pull ghcr.io/autamus/admixtools
Compressed Size : 58MB

Description

The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

Usage

Pull (Download)

To download the latest version of admixtools run,

docker pull ghcr.io/autamus/admixtools:latest

or to download a specific version of admixtools run,

docker pull ghcr.io/autamus/admixtools:7.0.1

Run

To run the container as an application run,

docker run --rm ghcr.io/autamus/admixtools admixtools --version

or to run the container in an interactive session run,

docker run -it --rm ghcr.io/autamus/admixtools bash

Mounting volumes between the container and your machine

To access files from your machine within the admixtools container you’ll have to mount them using the -v external/path:internal/path option.

For example,

docker run -v ~/Documents/Data:/Data ghcr.io/autamus/admixtools admixtools /Data/myData.csv

which will mount the ~/Documents/Data directory on your computer to the /Data directory within the container.

HPC

If you’re looking to use this container in an HPC environment we recommend using Singularity-HPC to use the container just as any other module on the cluster. Check out the SHPC admixtools container here.